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Recent publications of M. Tamakoshi

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2015

• The Ingenious Structure of Central Rotor Apparatus in VoV1; Key for Both Complex Disassembly and Energy Coupling between V1 and Vo
• Nakanishi, A., Kishikawa, J., Tamakoshi, M., Yokoyama, K.
  PloS One 10: e0119602 (2015)

2014

• Numerical Simulation of the Twitching Motility of Bacterium Crawling on a Solid Surface
• Morikawa, R., Tamakoshi, M., Miyakawa, T., Takasu, M.
  JPS Conf. Proc. 1, 016019 (2014)
• Imaging live cell in micro-liquid enclosure by X-ray laser diffraction
• Kimura, T., Joti, Y., Shibuya, A., Song, C., Kim, S., Tono, K., Yabashi, M., Tamakoshi, M., Moriya, T., Oshima, T., Ishikawa, T., Bessho, Y., Nishino, Y.
  Nat. Commun. 5, doi: 10.1038/ncomms4052 (2014)
  PubMed Nature.com
• Molecular basis of ADP inhibition of vacuolar (V)-type ATPase/synthase
• Kishikawa, J., Nakanishi, A., Furuike, S., Tamakoshi, M., Yokoyama, K.
  J. Biol. Chem. 289, 403-412 (2014)

2013

• Visualization of two distinct states of disassembly in the bacterial V-ATPase from Thermus thermophilus
• Morikawa R, Miyakawa T, Tamakoshi M, Takasu M
  Microscopy 62, 467-474 (2013)
• Simulation study of bacterial colonies formed by the twitching motility: the effect of slingshot-like motions of bacteria on the colony edge
• Tani, K ., Arthur, C. P., Tamakoshi, M ., Yoshida, M ., Yokoyama, K ., Mitsuoka, K ., Fujiyoshi, Y. and Gerle, C.
  AIP Conf. Proc. 1518, 590-593 (2013)

2011

• Genomic and proteomic characterization of the large Myoviridae bacteriophage TMA of the extreme thermophile Thermus thermophilus
• Tamakoshi M, Murakami A, Sugisawa M, Tsuneizumi K, Takeda S, Saheki T, Izumi T, Akiba T, Mitsuoka K, Toh H, Yamashita A, Arisaka F, Hattori M, Oshima T, Yamagishi A.
  Bacteriophage 1, 152-164 (2011) Landes
• Crystal Structures and Enzymatic Properties of a Triamine/Agmatine Aminopropyltransferase from Thermus thermophilus
• Ohnuma M, Ganbe T, Terui Y, Niitsu M, Sato T, Tanaka N, Tamakoshi M, Samejima K, Kumasaka T, Oshima T.
  J. Mol. Biol. 408, 971-86 (2011) PubMed

2010

• Transcription profile of Thermus thermophilus CRISPR systems after phage infection.
• Agari, Y., Sakamoto, K., Tamakoshi, M., Oshima, T., Kuramitsu, S., Shinkai, A.
  J. Mol. Biol. 395: 270-281. (2010) pubmed

2008

• ATP Hydrolysis and Synthesis of a Rotary Motor V-ATPase from Thermus thermophilus.
• Nakano M, Imamura H, Toei M, Tamakoshi M., Yoshida M, Yokoyama K.
  J Biol Chem. 25;283(30):20789-20796 (2008) pubmed

• Molecular mechanism of energy conservation in polysulfide respiration.
• Jormakka, M., Yokoyama, K., Yano, T., Tamakoshi, M., Akimoto, S., Shimamura, T., Curmi, P., Iwata, S.
  Nat. Struct. Mol. Biol. 15:730-737 (2008) pubmed

2007

• Dodecamer rotor ring defines H+/ATP ratio for ATP synthesis of prokaryotic V-ATPase from Thermus thermophilus.
• Toei M, Gerle C, Nakano M, Tani K, Gyobu N, Tamakoshi M, Sone N, Yoshida M, Fujiyoshi Y, Mitsuoka K, Yokoyama K.
  Proc. Natl. Acad. Sci. USA 104:20256-20261(2007) pubmed

2006

• Two-dimensional crystallization and analysis of projection images of intact　Thermus thermophilus V-ATPase.
• Gerle, C., Tani, K., Yokoyama, K., Tamakoshi, M., Yoshida, M., Fujiyoshi, Y., Mitsuoka, K.
  J. Struct. Biol. 153:200-206 (2006) pubmed

2005

• Structure of a central stalk subunit F of V-type ATPase/synthase from Thermus thermophilus.
• Makyio, H., Iino, R., Ikeda, C., Imamura, H., Tamakoshi, M., Iwata, M., Stock, D., Bernal, R. A., Yoshida, M., Yokoyama, K., and Iwata, S.
  EMBO J. 24:3974-3983 (2005)pubmed

• N1-aminopropylagmatine: A new polyamine produced as a key intermediate in polyamine biosynthesis of an extreme thermophile, Thermus thermophilus.
• Ohnuma, M., Terui, Y., Tamakoshi, M., Mitome, H., Niitsu, M., Samejima, K., Kawashima, E., and Oshima, T.
  J. Biol. Chem. 280:30073-30082 (2005)pubmed

2004

• Crystal structure of a central stalk subunit C and reversible association/dissociation of V-ATPase.
• Iwata, M., Imamura, H., Stambouli, E., Ikeda, C., Tamakoshi, M., Nagata, K., Makyio, H., Hankamer, B., Barber, J., Yoshida, M., Yokoyama, K., and Iwata, S.
  Proc. Natl. Acad. Sci. USA 101:59-64 (2004) pubmed

2003

• Subunit Arrangement in V-ATPase from Thermus thermophilus.
• Yokoyama, K., Nagata, K., Imamura, H., Ohkuma, S., Yoshida, M., and Tamakoshi M.
  J. Biol. Chem. 278:42686-42691 (2003) pubmed

• Rotation of the proteolipid ring in the V-ATPase.
• Yokoyama, K., Nakano, M., Imamura, H., Yoshida, M., Tamakoshi, M.
  J. Biol. Chem. 278:24255-24258 (2003) pubmed

2002

• Conserved bases in the TPsi C loop of tRNA are determinants for thermophile-specific 2-thiouridylation at position 54.
• Shigi, N., Suzuki, T., Tamakoshi, M., Oshima, T. and Watanabe, K.
  J. Biol. Chem. 277:39128-39135 (2002) pubmed

• An enzyme with a deep trefoil knot for the active-site architecture.
• Nureki, O., Shirouzu, M., Hashimoto, K., Ishitani, R., Terada, T., Tamakoshi, M., Oshima, T., Chijimatsu, M., Takio, K., Vassylyev, D. G., Shibata, T., Inoue, Y., Kuramitsu, S., Yokoyama, S.
  Acta Crystallogr D Biol Crystallogr 58:1129-1137 (2002) pubmed

2001

• Ancestral residues stabilizing 3-isopropylmalate dehydrogenase of an extreme thermophile: experimental evidence supporting the thermophilic common ancestor hypothesis.
• Miyazaki, J., Nakaya, S., Suzuki, T., Tamakoshi, M., Oshima, T., Yamagishi, A.
  J. Biochem. (Tokyo) 129:777-782 (2001) pubmed

• Selection of stabilized 3-isopropylmalate dehydrogenase of Saccharomyces cerevisiae using the host-vector system of an extreme thermophile, Thermus thermophilus.
• Tamakoshi, M., Nakano, Y., Kakizawa, S., Yamagishi, A. and Oshima, T.
  Extremophiles 5:17-22 (2001) pubmed

1999

• An efficient gene replacement and deletion system for an extreme thermophile, Thermus thermophilus.
• Tamakoshi, M., Yaoi, T., Oshima, T. and Yamagishi, A.
  FEMS Microbiol. Lett. 173:431-437 (1999) pubmed

1998

• The organization of the leuC, leuD and leuB genes of the extreme thermophile Thermus thermophilus.
• Tamakoshi, M., Yamagishi, A. and Oshima, T.
  Gene 222:125-132 (1998) pubmed

1997

• A new Thermus-Escherichia coli shuttle integration vector system.
• Tamakoshi, M., Uchida, M., Tanabe, K., Fukuyama, S., Yamagishi, A. and Oshima, T.
  J. Bacteriol. 179:4811-4814 (1997) pubmed

1995

• Screening of stable proteins in an extreme thermophile, Thermus thermophilus.
• Tamakoshi, M., Yamagishi, A. and Oshima, T.
  Mol. Microbiol. 16: 1031-1036 (1995) pubmed

• The rat neutrophil low-affinity Fc receptor for IgG: molecular cloning and functional characterization.
• Isashi, Y., Tamakoshi, M., Nagai, Y., Sudo, T., Murakami, M. and Uede, T.
  Immunol. Lett. 46: 157-163 (1995) pubmed

1994

• Identification of an alternatively spliced form of the murine homologue of B7.
• Inobe, M., Linsley, P. S., Ledbetter, J. A., Nagai, Y., Tamakoshi, M. and Uede, T.
  Biochem. Biophys. Res. Commun. 200: 443-44 (1994) pubmed

• In vivo cytokine gene expression in various T cell subsets of the autoimmune MRL/Mp-lpr/lpr mouse.
• Mori, K., Kobayashi, S., Inobe, M., Jia, W. Y., Tamakoshi, M., Miyazaki, T. and Uede, T.
  Autoimmunity 17: 49-57 (1994) pubmed

1993

• Expression and function of the interleukin 7 receptor in murine lymphocytes.
• Sudo, T., Nishikawa, S., Ohno, N., Akiyama, N., Tamakoshi, M., Yoshida, H. and Nishikawa, S.
  Proc. Natl. Acad. Sci. USA 90: 9125-9129 (1993) pubmed

• Recombination-deficient mutants of an extreme thermophile, Thermus thermophilus.
• Takada, T., Akanuma, S., Kotsuka, T., Tamakoshi, M., Yamagishi, A., and Oshima, T.
  Appl. Environ. Microbiol. 59: 2737-2739 (1993) pubmed